Root exclusions in the server to project root (#16043)
## Summary
fixes: #16041
## Test Plan
Using the [project](https://github.com/bwcc-clan/polebot) in the linked
issue:
Notice how the project "polebot" is in the "play" directory which is
included in the `exclude` setting as:
```toml
exclude = ["play"]
```
**Before this fix**
```
DEBUG ruff:worker:0 ruff_server::resolve: Ignored path via `exclude`: /private/tmp/ruff-test/play/polebot/src/utils/log_tools.py
```
**After this fix**
```
DEBUG ruff:worker:2 ruff_server::resolve: Included path via `include`: /private/tmp/ruff-test/play/polebot/src/utils/log_tools.py
```
I also updated the same project to remove the "play" directory from the
`exclude` setting and made sure that anything under the `polebot/play`
directory is included:
```
DEBUG ruff:worker:4 ruff_server::resolve: Included path via `include`: /private/tmp/ruff-test/play/polebot/play/test.py
```
And, excluded when I add the directory back:
```
DEBUG ruff:worker:2 ruff_server::resolve: Ignored path via `exclude`: /private/tmp/ruff-test/play/polebot/play/test.py
```
