gh-36276: Yet more spkg_configure for standard python packages
This is a continuation of #36256
- Fixes #36301
- Fixes https://groups.google.com/g/sage-
release/c/1wOBmhvNJqc/m/Jk14VAbjBAAJ (hence marked critical)
### :memo: Checklist
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### :hourglass: Dependencies
- #36296: to use an up to date Sphinx
- #36267: updated ipympl, etc
Also, a Jupyter/Python issue was uncovered there, which might need work.
URL: https://github.com/sagemath/sage/pull/36276
Reported by: Dima Pasechnik
Reviewer(s): Matthias Köppe, Michael Orlitzky
