huggingface/transformers

Pull Requests Commits

Keep ESMFold2 sub-configs internal (drop their model_types)

Rocketknight1 committed 10 hours ago

bec43e21

Apply make fix-repo sweep + bf16 ESMFold2 usage example

Rocketknight1 committed 10 hours ago

302402aa

Make ESMFold2 dtype-honest: drop in-model autocast, support from_pretrained(dtype=)

Rocketknight1 committed 11 hours ago

7c5b8c89

Fix ESMFold2 integration test: ubiquitin + correct 0-1 pLDDT/pTM scale

Rocketknight1 committed 1 day ago

ce2ba0e0

Convert ESMCConfig to the v5 @strict / @auto_docstring style

Rocketknight1 committed 1 day ago

c3e02c19

Ruff-format the ESMFold2 fork files (deferred style sweep)

Rocketknight1 committed 1 day ago

d2bdfe0c

Add ESMFold2 model doc page

Rocketknight1 committed 1 day ago

a5ec40d2

Add ESMFold2 tests + sub-config model_types

Rocketknight1 committed 1 day ago

5e4e96af

Convert ESMFold2Config to the v5 @strict / PreTrainedConfig style

Rocketknight1 committed 1 day ago

f639c770

Route ESMFold2 plain self-attention through the v5 attention interface

Rocketknight1 committed 1 day ago

5fe5ac45

Remove TransformerEngine fp8 path from ESMFold2

Rocketknight1 committed 1 day ago

6a4af599

Drop the experimental ESMFold2 variant + esmfold2_v2 mapping (release-only)

Rocketknight1 committed 1 day ago

1db174df

Get ESMFold2 importing: add __all__ + load ESMC via the Auto registry

Rocketknight1 committed 1 day ago

b1ff167c

Normalize ESMC docstrings to satisfy check_docstrings

Rocketknight1 committed 1 day ago

68fdb7de

Remove the SAE (esmc_sae) from ESMC — deferred to a follow-up PR

Rocketknight1 committed 1 day ago

ddd371d1

Add ESMC docs + resolve auto_docstring checkpoint for the classification heads

Rocketknight1 committed 1 day ago

e553eda8

Add ESMC model tests + make _init_weights cover all modules

Rocketknight1 committed 1 day ago

d9a1438c

Drop vestigial vocab_file entry from ESMCTokenizer VOCAB_FILES_NAMES

Rocketknight1 committed 1 day ago

7d35c168

Fix ESMCTokenizer docstring example + add tokenizer tests

Rocketknight1 committed 1 day ago

7a40acf7

Fix ESMC checkpoint loading + bidirectional attention (verified vs fork on ESMC-6B)

Rocketknight1 committed 1 day ago

64d9ae59

Add modular_esmc.py; generate modeling_esmc.py from it

Rocketknight1 committed 1 day ago

3ddc7139

Modernize ESMC rotary to the standard (cos, sin) + apply_rotary_pos_emb convention

Rocketknight1 committed 2 days ago

5bbaa6e1

Remove transformer_engine dependency from ESMC (pure-PyTorch only)

Rocketknight1 committed 2 days ago

a863532a

Refactor ESMC attention onto the v5 ALL_ATTENTION_FUNCTIONS interface

Rocketknight1 committed 2 days ago

5ba14861

Remove vendored distributed/ (2D context-parallel) stack from esmfold2

Rocketknight1 committed 2 days ago

0dd2f492

Strip vendored Triton kernels + set_kernel_backend selector from esmfold2

Rocketknight1 committed 2 days ago

e78e6ca4

Port ESMC + ESMFold2 model code from fork onto v5 main (baseline, unadapted)

Rocketknight1 committed 2 days ago

4a947b00

Update compressed tensors minimum version (#46342)

SunMarc committed 2 days ago

Verified 4ae05b0f

Fix _is_package_available reporting available without a version (#46125)

blipbyte committed 2 days ago

Verified 18d845c9

remove sec (#46346)

ydshieh committed 2 days ago

Verified 9e9ed4e6

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