Maximsmol/snakekit 1 #298
maximsmol
merged
129 commits into
kenny/snakekit
from
maximsmol/snakekit-1
gate develop
bbd61721
more renaming
bd2873ad
del comments
84deaddd
save everything
d5239aca
del unused imports
f2757bf0
updated quickstart for eligo
bfbebbce
examples didnt work
7e272215
fix: escaping '\' in string literal
68538dc8
feat: changelog + bump version
efecb4ef
Merge branch 'main' of github.com:latchbio/latch into ayush/gate-develop
77177907
Merge pull request #293 from latchbio/hannah/registry-docs-fix
d8de4be6
Merge pull request #292 from latchbio/hannah/docs
7831e3e6
warning on too many authentication failures
9347bec7
changelog + setup
33559c41
Merge pull request #291 from latchbio/ayush/gate-develop
c2fa31c8
fix: use ldata node name for downloaded files when using absolute nod…
7263c334
fix: PR comments
b083016c
debug
f41be278
fix: allow node paths for remote paths
039619b9
fix: typo
389efc0d
fix: remove prints
453afc8e
fix: changelog + setup.py
18c25b4e
Merge pull request #295 from latchbio/aidan/use-ldata-node-name-for-d…
aface426
bump flytekit
110b8aa1
add iterdir method to latchdir
bf427cf7
switch to names
3c31961f
more stuff
75d54a01
del prints
fd525d2b
raise on no directory found
867649da
fixes 1
b5c4e369
im stuff
0129da22
fix snakemake name metadata
d6cf3f8b
the big nasty
53d22ca1
oopsie
e30f119c
fix entrypoint name
340df576
fixies
ab9d8fea
del old config file
93cd41ce
upload
d87f15a6
upload
899089c3
fix jit workflow new metadata loading
a58f564d
fixup indents
e9407d9c
upload
ca3065e5
upgrade pre-commit black
73024d1c
upload entrypoint to debug
4fb19f79
upload
9f4e0759
fix endpoint
60d4ff02
fix hashlib import
9eb7764d
add metadata for params
c97f6446
upload
6ad08310
upload
7c0b3743
upload
b89e41cc
use dataclasses, misc
00899008
oops
989ffaa6
Merge pull request #296 from latchbio/ayush/sdk-ls
3b107afd
bump changelog + version
aaf28b60
normalize paths to respect user workspace setting
5981c60e
changelog + del import
cdb083b4
Merge pull request #299 from latchbio/ayush/add-workspace-to-remote-p…
b07089a3
upload
e64e9817
dur
7045856f
comments
ba4e1e2e
bump ver and changelog
7bb5099f
changelog
18fbfd16
Merge pull request #300 from latchbio/ayush/oopsie
c25a6200
fix docker tokens
89d99d84
fixie
aded071b
use sys.executable
9a3a25ee
do not remove standard env
ed05f803
fix compiled snakemake parser patch thing
39089f6a
actually rn wf
7e1105d7
fix indent
77f4a62e
fix quotes
61988ee0
fix output names
89cf2325
fix output value in JIT
46ae1b70
add debug compiled py upload
8da5b8fa
fix oopsie
abf0a23e
debug more
19d1a1e5
fix old snakemake compat
75b62b08
replace i/o/params for all tasks
9b12204d
pin new lytekit
c46b9c4d
fixup
b3e7ed14
fix oopsie
624a1dea
upload logs, benchmarks
ec5c982b
work with tasks with no benchmarks
c9b45dfb
fix
890835de
fix debug?
3c8450f4
fix
6c604193
fixie
b3793eca
fix oopsie
33e45f64
cmon
e594db72
support nameless params
7d70abec
fix
4b966451
fix typo
81f4abbe
support keyword inputs
0be0a803
fix
952600d2
fix multioutput tasks
aa77d1de
fix multiple target files
3b5e4907
add support for directory()
cb98d0d1
allow using directories between tasks
80e6e23f
support dirs in workflow output
e18abc6d
fix missing import
74a356c2
fix
10d31314
deal with iofile
e7113c35
unhashable type
28cc1efd
AidanAbd
requested changes
on 2023-07-19
add latch_metadata.py suggestion
5e692601
support named i/o with expand
a1e20157
fix
e573ddc0
fix wrong check for named namedlist value
16f4747f
support lists in single task entrypoint
4e2a25c5
fix logs error, use same internal output dir
893ae7bb
better error reporting for when snakemake fails
a12b0422
list out current directory on failure
6d0abd34
improve outputs
da56091d
fixup outputs more
f84ca910
tail the log if there is only one
9a79b457
fix missing import
e9a4cd48
fixup log tailing
f9a2082b
print workflow link after register
d85e8950
move stuff around
f56cff74
fix tailer
1be28f3e
Merge remote-tracking branch 'origin/main' into maximsmol/snakekit-1
97da7792
fix bad merge deps
32bd3bd7
fix more bad merge
770e44a2
del doc for now
e7acf070
ux fixes
9f4b16bc
fix Hannah's issues
09d05612
do not depend on encode_target_jobs_cli_args
8be9cf60
fix docker image name for workflows with special chars
1355a62a
support environment.yml
9920746c
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