latch
Generate nextflow config
#403
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Generate nextflow config #403

rahuldesai1 merged 16 commits into kenny/nextflow from rahuldesai1/generate-nextflow-config
rahuldesai1
rahuldesai1 add support for nextflow config generation
fbc41040
rahuldesai1 download nf deps if they don't exist
3e35aa44
rahuldesai1 remove NextflowFileParam
c30966af
rahuldesai1 ignore nextflow specific tags in yaml loading
efc5f0ce
rahuldesai1 move validate_snakemake logic
d111ac54
rahuldesai1 rahuldesai1 requested a review from ayushkamat ayushkamat 2 years ago
rahuldesai1 add support for nextflow dockerfile cmd
851d8936
rahuldesai1 improved error messaging for default values
e3df19f1
rahuldesai1 add nextflow binary to docker container
8b3ff7d4
rahuldesai1 update task status to SKIPPED in nextflow
64155921
rahuldesai1 allow arr index and retry to be null
1a2c1c9b
rahuldesai1 regex for parsing pod name
e6b26966
rahuldesai1 make override_task_status private
97f2b214
rahuldesai1 reformat regex
96f1e08a
ayushkamat
ayushkamat requested changes on 2024-04-01
rahuldesai1 resolve PR comments
783b0f3e
rahuldesai1 Merge pull request #404 from latchbio/rahuldesai1/nextflow-skipped-tasks
f972adc3
rahuldesai1 read json instead of yaml
7d06409d
rahuldesai1 rahuldesai1 merged 867fc5f5 into kenny/nextflow 2 years ago

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