chore: output absolute path warnings to stderr (#6434)
### Description
PR gets the integration test to pass for both Rust/Go by:
- Altering the test to allow for duplicated warnings. (Not ideal, but
since this *only* happens on the Go codepath with debug assertions
enabled as we parse `turbo.json` twice, once in Rust and once in Go)
- Output warnings to stderr to match Go behavior
### Testing Instructions
`turborepo-tests/integration/tests/run/absolute-path-warning.t` should
pass now with the Rust codepath
Closes TURBO-1650
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Co-authored-by: Chris Olszewski <Chris Olszewski>
