latchbio/latch

Pull Requests Commits

Merge remote-tracking branch 'origin/rahuldesai1/dynamic-nextflow-task' into ayush/private-docker

rahuldesai1 committed 1 year ago

7eca9f6f

add newline print after subprocess completion

rahuldesai1 committed 1 year ago

6744ebb7

Merge remote-tracking branch 'origin/main' into rahuldesai1/dynamic-nextflow-task

rahuldesai1 committed 1 year ago

4ba390ad

bump version dev4

rahuldesai1 committed 1 year ago

44f823fe

Merge pull request #450 from latchbio/rahuldesai1/nextflow-mount-service-account

rahuldesai1 committed 1 year ago

Verified 6d6abffd

mount service account token

rahuldesai1 committed 1 year ago

e44b7c98

rahuldesai1 committed 1 year ago

ef60372f

download from nextflow-v2

rahuldesai1 committed 1 year ago

4390a8cc

rahuldesai1 committed 1 year ago

0812ccbe

ayushkamat committed 1 year ago

5a5665eb

upgrade docker dep per https://github.com/docker/docker-py/issues/3256

ayushkamat committed 1 year ago

82322ee7

remove finalzing workflow print statement

rahuldesai1 committed 1 year ago

0e32e058

Merge pull request #448 from latchbio/rahuldesai1/nf-runtime-resources

rahuldesai1 committed 1 year ago

Verified e0f08c98

upload .nextflow.log instead of printing

rahuldesai1 committed 1 year ago

2ed501ff

cleanup on completion

rahuldesai1 committed 1 year ago

1b37c8a8

fix: toleration assignment

AidanAbd committed 1 year ago

52dc92fc

Merge pull request #443 from latchbio/aidan/rm-personal-ws

AidanAbd committed 1 year ago

Verified 63216f0f

fix: bump version

AidanAbd committed 1 year ago

2fb59542

fix: merge in master

AidanAbd committed 1 year ago

35ff1e29

rahuldesai1 committed 1 year ago

39d53fe8

make nextflow runtime resources configurable

rahuldesai1 committed 1 year ago

58fa25ed

Merge pull request #447 from latchbio/rahuldesai1/snakemake-fix-param-conversion

rahuldesai1 committed 1 year ago

Verified b408919f

update CHANGELOG

rahuldesai1 committed 1 year ago

733532e7

check if output is directory annotated

rahuldesai1 committed 1 year ago

b0ccc11d

only convert pathlib Path

rahuldesai1 committed 1 year ago

7c95647e

ver + changelog

rahuldesai1 committed 1 year ago

0bd4bf1b

only convert param to string if its not primitive

rahuldesai1 committed 1 year ago

a0fda75a

Merge pull request #446 from latchbio/rahuldesai1/fix-container-script-snakemake

rahuldesai1 committed 1 year ago

Verified 2e231ebc

ver + changelog

rahuldesai1 committed 1 year ago

6bfbaeee

fix snakemake script directive for containers

rahuldesai1 committed 1 year ago

0020d44d

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