latchbio/latch

Pull Requests Commits

upload .nextflow.log instead of printing

rahuldesai1 committed 1 year ago

2ed501ff

cleanup on completion

rahuldesai1 committed 1 year ago

1b37c8a8

rahuldesai1 committed 1 year ago

39d53fe8

make nextflow runtime resources configurable

rahuldesai1 committed 1 year ago

58fa25ed

ignore dangling symlinks when copying root directory to shared

rahuldesai1 committed 1 year ago

5748b57b

rahuldesai1 committed 1 year ago

a3d6c162

copy files to EFS before running

rahuldesai1 committed 1 year ago

a0419b81

Merge pull request #442 from latchbio/ayush/private-docker

rahuldesai1 committed 1 year ago

Verified ddf1a2d4

Merge branch 'rahuldesai1/dynamic-nextflow-task' into ayush/private-docker

ayushkamat committed 1 year ago

Verified babff428

ayushkamat committed 1 year ago

de48345d

fix bin dir issue + dump nf logs on error

rahuldesai1 committed 1 year ago

8c348b60

fix path to nf binary

rahuldesai1 committed 2 years ago

fccc6ab0

download deps + bug fixes

rahuldesai1 committed 2 years ago

aad89342

rahuldesai1 committed 2 years ago

e5c464f2

add entrypoint generation

rahuldesai1 committed 2 years ago

46298241

use pvc placeholder

rahuldesai1 committed 2 years ago

686e1ae6

create dynamic nextflow task

rahuldesai1 committed 2 years ago

12e1eb11

ver + changelog

rahuldesai1 committed 2 years ago

d6695988

Merge pull request #439 from latchbio/rahuldesai1/dra-loosen-params-check

rahuldesai1 committed 2 years ago

Verified 6efc8d18

update error message

rahuldesai1 committed 2 years ago

444ae61e

add type check back

rahuldesai1 committed 2 years ago

52da2aa7

check that param names exist in task signature for DRA

rahuldesai1 committed 2 years ago

3a7f9d63

ver + changelog

rahuldesai1 committed 2 years ago

4db4d1b0

rahuldesai1 committed 2 years ago

fafd91f7

write workflow outputs to execution subdirectory

rahuldesai1 committed 2 years ago

b5049b3a

ver + changelog

rahuldesai1 committed 2 years ago

c6a3ac2e

Merge pull request #432 from latchbio/rahuldesai1/snakemake-input-dir-support

rahuldesai1 committed 2 years ago

Verified 80330119

actually just inline isdir

rahuldesai1 committed 2 years ago

cd951c7e

make is_dir private

rahuldesai1 committed 2 years ago

ea1f2e6e

add support for snakemake directory inputs

rahuldesai1 committed 2 years ago

c0b2e803

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