latchbio/latch

Pull Requests Commits

rahuldesai1 committed 2 years ago

e44aaa28

add docs and support for large instances

rahuldesai1 committed 2 years ago

1a2a7065

add gpu support for Snakemake when not running in containers

rahuldesai1 committed 2 years ago

5e995d36

Merge pull request #380 from latchbio/rahuldesai1/snakemake/update-docs

rahuldesai1 committed 2 years ago

Verified a523c527

run docs through grammarly

rahuldesai1 committed 2 years ago

00b8331c

rahuldesai1 committed 2 years ago

13e5ed0e

remove confirmation for generating __init__.py if it doesn't exist

rahuldesai1 committed 2 years ago

9b0b6ec1

update tutorial to be more interactive

rahuldesai1 committed 2 years ago

297eeb11

update snakemake docs

rahuldesai1 committed 2 years ago

9532c5d2

Merge pull request #379 from latchbio/rahuldesai1/snakemake/cleanup

rahuldesai1 committed 2 years ago

Verified b6383d85

cleanup output upload logic, remove duplicate uploads

rahuldesai1 committed 2 years ago

9db426e6

fix bug where threads directive was getting overridden to 1

rahuldesai1 committed 2 years ago

e51bf0a0

Merge pull request #378 from latchbio/taras/change-secrets-auth

Taras Priadka committed 2 years ago

Verified 91f26d8e

fix: correct endpoint url

Taras Priadka committed 2 years ago

Verified 044e4787

ayushkamat committed 2 years ago

dbdfe3a8

hardcode endpoint

Taras Priadka committed 2 years ago

Verified a64e55df

feat: delete local secrets and use get_auth_header

Taras Priadka committed 2 years ago

Verified 3ec5d2f3

Change secret local to the regular get-secret endpoint

Taras Priadka committed 2 years ago

Verified 2776aa88

update ver + changelog

ayushkamat committed 2 years ago

72ddbd71

Merge pull request #377 from latchbio/rahuldesai1/snakemake/change-default-env-to-false

ayushkamat committed 2 years ago

Verified bca43dfa

set conda and containers to be false by default

rahuldesai1 committed 2 years ago

31731e0f

Merge pull request #376 from latchbio/rahuldesai1-patch-1

rahuldesai1 committed 2 years ago

Verified c9693395

version + CHANGELOG.md

rahuldesai1 committed 2 years ago

c9196c03

Merge pull request #375 from latchbio/rahuldesai1/snakemake/add-env-config

rahuldesai1 committed 2 years ago

Verified 2f86bd7b

add docs for Snakemake container support

rahuldesai1 committed 2 years ago

f9343c16

use_containers -> use_container

rahuldesai1 committed 2 years ago

27c7f168

add defaults for env config

rahuldesai1 committed 2 years ago

0aa484a2

update pyproject.toml

ayushkamat committed 2 years ago

e287386c

update black version and re-format

rahuldesai1 committed 2 years ago

79073334

add toggle for using conda and container envs

rahuldesai1 committed 2 years ago

208aa4b3

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