latchbio/latch

Pull Requests Commits

resolve PR comments

rahuldesai1 committed 2 years ago

783b0f3e

rahuldesai1 committed 2 years ago

96f1e08a

make override_task_status private

rahuldesai1 committed 2 years ago

97f2b214

regex for parsing pod name

rahuldesai1 committed 2 years ago

e6b26966

allow arr index and retry to be null

rahuldesai1 committed 2 years ago

1a2c1c9b

update task status to SKIPPED in nextflow

rahuldesai1 committed 2 years ago

64155921

add nextflow binary to docker container

rahuldesai1 committed 2 years ago

8b3ff7d4

improved error messaging for default values

rahuldesai1 committed 2 years ago

e3df19f1

add support for nextflow dockerfile cmd

rahuldesai1 committed 2 years ago

851d8936

move validate_snakemake logic

rahuldesai1 committed 2 years ago

d111ac54

ignore nextflow specific tags in yaml loading

rahuldesai1 committed 2 years ago

efc5f0ce

remove NextflowFileParam

rahuldesai1 committed 2 years ago

c30966af

download nf deps if they don't exist

rahuldesai1 committed 2 years ago

3e35aa44

add support for nextflow config generation

rahuldesai1 committed 2 years ago

fbc41040

ayushkamat committed 2 years ago

5552507b

fixes for bronte

ayushkamat committed 2 years ago

c450a975

ayushkamat committed 2 years ago

dfe10c31

ayushkamat committed 2 years ago

4296b3ac

Merge branch 'main' of github.com:latchbio/latch into kenny/nextflow

ayushkamat committed 2 years ago

b4e0c176

ver + changelog

rahuldesai1 committed 2 years ago

230e2568

Merge pull request #401 from latchbio/rahuldesai1/snakemake/fix-duplicate-output-bindings

rahuldesai1 committed 2 years ago

Verified 61440628

fix duplicate output binding error for SM workflows

rahuldesai1 committed 2 years ago

17ff6517

Merge branch 'main' of github.com:latchbio/latch into kenny/nextflow

ayushkamat committed 2 years ago

c3096b28

changelog + ver

ayushkamat committed 2 years ago

98c264c1

fix ssh key adding bug

ayushkamat committed 2 years ago

4fdff2ed

Merge pull request #400 from latchbio/rahuldesai1/rmr/cleanup-fnf-error

rahuldesai1 committed 2 years ago

Verified 29ec4c8f

clean exit on file not found for rmr and mkdirp

rahuldesai1 committed 2 years ago

6fc2e9ab

ayushkamat committed 2 years ago

64b6561f

ver + changelog

rahuldesai1 committed 2 years ago

e7f41ff6

update output path staging

ayushkamat committed 2 years ago

5cd10037

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